MLOC_43532 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains01.114771.707311.34139
LEAShoots from the seedlings (10 cm shoot stage)5.0149404.216144.38921
INF1Young developing inflorescences (5mm)0.5598241.113600.812376
INF2Developing inflorescences (1-1.5 cm)1.307312.406564.22272.64027
ROORoots from the seedlings (10 cm shoot stage)01.164873.830792.44844
NODDeveloping tillers at six leaf stage, 3rd internode0.9968640.7303610.9066622.56272
CAR5Developing grain, bracts removed (5 DPA)1.116550.9868922.406471.46875
CAR15Developing grain, bracts removed (15 DPA)00.6298310.9133562.07189



CDS Structure of MLOC_43532






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_43532.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_43532.1CUST_6101_PI427708083AvailableAvailablecontig_271116 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g31460.1 +3 1e-20 86 42/49 (86%) 13108.m03262 protein GTPase of unknown function domain containing protein, putative, expressed
TAIR PP10 AT1G78010.1 +3 2e-13 65 29/49 (59%) tRNA modification GTPase, putative | chr1:29333535-29336297 FORWARD LENGTH=560