MLOC_43526 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.801854.473924.11094.54817
LEAShoots from the seedlings (10 cm shoot stage)38.3665104.245167.11582.1396
INF1Young developing inflorescences (5mm)4.609881.322460.7725351.95752
INF2Developing inflorescences (1-1.5 cm)0.2159770.02604550.6775430.288735
ROORoots from the seedlings (10 cm shoot stage)14.99876.9328412.00449.66543
NODDeveloping tillers at six leaf stage, 3rd internode83.77234.111444.731589.7374
CAR5Developing grain, bracts removed (5 DPA)0.9273370.18235200.54348
CAR15Developing grain, bracts removed (15 DPA)0.3263860.1371960.06747460.506965



CDS Structure of MLOC_43526






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_43526.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK369648NoneNoneNoneNone
MLOC_43526.1CUST_2585_PI427708080AvailableAvailablecontig_271078 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g05680.1 +3 0.0 550 267/310 (86%) 13105.m00599 protein 1-aminocyclopropane-1-carboxylate oxidase, putative, expressed
TAIR PP10 AT1G77330.1 +3 2e-133 392 197/313 (63%) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:29063215-29064447 REVERSE LENGTH=307