MLOC_4350 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.473316.010615.889611.8502
LEAShoots from the seedlings (10 cm shoot stage)15.29639.026986.813597.94532
INF1Young developing inflorescences (5mm)46.752146.933845.382531.0939
INF2Developing inflorescences (1-1.5 cm)35.207937.289837.067333.1413
ROORoots from the seedlings (10 cm shoot stage)6.5937913.850411.321711.9206
NODDeveloping tillers at six leaf stage, 3rd internode3.165564.237779.6878215.0308
CAR5Developing grain, bracts removed (5 DPA)19.36916.548418.918314.3171
CAR15Developing grain, bracts removed (15 DPA)7.483256.12886.0574612.2497



CDS Structure of MLOC_4350






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_4350.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_4350.2CUST_12108_PI427708080AvailableAvailablecontig_135036 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g18010.1 +1 0.0 699 356/451 (79%) 13104.m01643 protein cleavage and polyadenylation specificity factor subunit 1, putative, expressed
TAIR PP10 AT5G51660.1 +1 0.0 1061 556/852 (65%) | Symbols: CPSF160, ATCPSF160 | cleavage and polyadenylation specificity factor 160 | chr5:20980250-20989268 FORWARD LENGTH=1442