MLOC_43498 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains16.426712.713413.86515.4438
LEAShoots from the seedlings (10 cm shoot stage)1.772611.723471.230151.45072
INF1Young developing inflorescences (5mm)00.029316400.0374258
INF2Developing inflorescences (1-1.5 cm)00.02457360.03284190.0736588
ROORoots from the seedlings (10 cm shoot stage)7.5290910.11297.1712713.0881
NODDeveloping tillers at six leaf stage, 3rd internode2.107942.902323.6516910.8195
CAR5Developing grain, bracts removed (5 DPA)9.323799.0000110.469111.014
CAR15Developing grain, bracts removed (15 DPA)4.202124.153083.6636911.0724



CDS Structure of MLOC_43498






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_43498.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250451.1NoneNoneNoneNone
MLOC_43498.1CUST_2583_PI427708080AvailableAvailablecontig_270811 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g44980.1 -3 4e-156 449 221/301 (73%) 13104.m04501 protein short-chain dehydrogenase/reductase, putative, expressed
TAIR PP10 AT1G01800.1 -3 2e-80 253 138/300 (46%) NAD(P)-binding Rossmann-fold superfamily protein | chr1:293396-294888 FORWARD LENGTH=295