MLOC_43486 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains46.377332.392934.338336.0042
LEAShoots from the seedlings (10 cm shoot stage)16.029616.257420.931714.2366
INF1Young developing inflorescences (5mm)5.898897.083466.519145.55707
INF2Developing inflorescences (1-1.5 cm)3.424894.876825.522965.03784
ROORoots from the seedlings (10 cm shoot stage)28.725127.962624.104331.5204
NODDeveloping tillers at six leaf stage, 3rd internode10.603512.912111.199138.7297
CAR5Developing grain, bracts removed (5 DPA)13.940516.638615.039915.2483
CAR15Developing grain, bracts removed (15 DPA)1.486291.943011.40233.97673



CDS Structure of MLOC_43486






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_43486.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366731NoneNoneNoneNone
MLOC_43486.2CUST_2582_PI427708080AvailableAvailablecontig_270723 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g38200.1 +1 0.0 605 322/371 (87%) 13102.m04201 protein dehydrogenase, putative, expressed
TAIR PP10 AT4G35260.1 +1 0.0 583 309/365 (85%) | Symbols: IDH1, IDH-I | isocitrate dehydrogenase 1 | chr4:16774494-16776233 REVERSE LENGTH=367