MLOC_43436 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.8326510.4481940.8260140.892849
LEAShoots from the seedlings (10 cm shoot stage)0.9671520.2689940.2534940.732185
INF1Young developing inflorescences (5mm)0.6334840.6997670.9544751.14274
INF2Developing inflorescences (1-1.5 cm)0.9855491.229661.503822.20989
ROORoots from the seedlings (10 cm shoot stage)0.6168390.8247790.8641731.53902
NODDeveloping tillers at six leaf stage, 3rd internode1.988471.556282.6433310.3908
CAR5Developing grain, bracts removed (5 DPA)1.530331.554530.4253792.04633
CAR15Developing grain, bracts removed (15 DPA)0.8479980.666830.3601312.30317



CDS Structure of MLOC_43436






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_43436.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_43436.1CUST_6089_PI427708083AvailableAvailablecontig_27033 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g05280.1 +3 5e-53 174 84/102 (82%) 13105.m00547 protein zinc finger family protein, putative, expressed
TAIR PP10 AT3G47990.1 +3 4e-45 152 67/82 (82%) | Symbols: SIS3 | SUGAR-INSENSITIVE 3 | chr3:17713367-17716051 REVERSE LENGTH=358