- Predicted Gene MLOC_43433
MLOC_43433 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_43433_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 8.97417 | 6.75836 | 10.4114 | 8.41367 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 11.5056 | 2.58809 | 7.24104 | 5.43936 |
INF1 | Young developing inflorescences (5mm) | 0.412716 | 0.288201 | 0.29954 | 0.319153 |
INF2 | Developing inflorescences (1-1.5 cm) | 0.268026 | 0.577857 | 1.01957 | 0.773882 |
ROO | Roots from the seedlings (10 cm shoot stage) | 6.07982 | 1.82658 | 3.53208 | 2.78049 |
NOD | Developing tillers at six leaf stage, 3rd internode | 11.2247 | 15.4065 | 28.4662 | 41.2239 |
CAR5 | Developing grain, bracts removed (5 DPA) | 7.85071 | 7.80675 | 7.61456 | 8.9105 |
CAR15 | Developing grain, bracts removed (15 DPA) | 42.6259 | 34.5214 | 36.8649 | 105.29 |
CDS Structure of MLOC_43433
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_43433.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os06g06780.1 |
-1 |
7e-41 |
144 |
86/123 (70%) |
13106.m00703 protein harpin-induced protein, putative, expressed |
TAIR PP10 |
AT1G45688.2 |
-1 |
4e-19 |
83 |
63/117 (54%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:17191502-17192464 FORWARD LENGTH=248 |