MLOC_43433 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.974176.7583610.41148.41367
LEAShoots from the seedlings (10 cm shoot stage)11.50562.588097.241045.43936
INF1Young developing inflorescences (5mm)0.4127160.2882010.299540.319153
INF2Developing inflorescences (1-1.5 cm)0.2680260.5778571.019570.773882
ROORoots from the seedlings (10 cm shoot stage)6.079821.826583.532082.78049
NODDeveloping tillers at six leaf stage, 3rd internode11.224715.406528.466241.2239
CAR5Developing grain, bracts removed (5 DPA)7.850717.806757.614568.9105
CAR15Developing grain, bracts removed (15 DPA)42.625934.521436.8649105.29



CDS Structure of MLOC_43433






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_43433.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_43433.1CUST_6088_PI427708083AvailableAvailablecontig_270289 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g06780.1 -1 7e-41 144 86/123 (70%) 13106.m00703 protein harpin-induced protein, putative, expressed
TAIR PP10 AT1G45688.2 -1 4e-19 83 63/117 (54%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:17191502-17192464 FORWARD LENGTH=248