MLOC_4343 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.332151.019351.012430.74921
LEAShoots from the seedlings (10 cm shoot stage)0.4958180.4366770.40410.375038
INF1Young developing inflorescences (5mm)0.9448751.261761.109720.841028
INF2Developing inflorescences (1-1.5 cm)1.772091.72011.613271.74288
ROORoots from the seedlings (10 cm shoot stage)0.4895152.188791.64692.07667
NODDeveloping tillers at six leaf stage, 3rd internode1.35211.638052.038395.53959
CAR5Developing grain, bracts removed (5 DPA)2.456752.220762.405982.08784
CAR15Developing grain, bracts removed (15 DPA)0.9108310.9909720.9660231.99479



CDS Structure of MLOC_4343






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_4343.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_4343.1CUST_12103_PI427708080AvailableAvailablecontig_135032 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g22484.1 +1 0.0 380 229/452 (51%) 13110.m01885 protein RGH2B, putative, expressed
TAIR PP10 AT1G59780.1 +1 8e-27 74 65/221 (29%) NB-ARC domain-containing disease resistance protein | chr1:21993581-21997691 REVERSE LENGTH=906