MLOC_43331 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.346610.856217.090913.3774
LEAShoots from the seedlings (10 cm shoot stage)1188.922742.984339.332340.73
INF1Young developing inflorescences (5mm)0.3704220.1542850.6288830.344308
INF2Developing inflorescences (1-1.5 cm)1.364731.150221.893821.62815
ROORoots from the seedlings (10 cm shoot stage)81.086145.319251.601957.3117
NODDeveloping tillers at six leaf stage, 3rd internode9.8181312.238827.248744.7963
CAR5Developing grain, bracts removed (5 DPA)28.024830.162328.64830.1577
CAR15Developing grain, bracts removed (15 DPA)69.342167.127664.1573168.434



CDS Structure of MLOC_43331






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_43331.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249500.1NoneNoneNoneNone
MLOC_43331.1CUST_2579_PI427708080AvailableAvailablecontig_269476 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g45274.3 +2 1e-127 369 184/225 (82%) 13101.m04642 protein carbonic anhydrase, chloroplast precursor, putative, expressed
TAIR PP10 AT5G14740.2 +2 1e-81 251 125/197 (63%) | Symbols: CA2, CA18, BETA CA2 | carbonic anhydrase 2 | chr5:4760536-4762382 FORWARD LENGTH=259