MLOC_43313 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.4687412.145912.023710.911
LEAShoots from the seedlings (10 cm shoot stage)11.766810.881411.41149.71073
INF1Young developing inflorescences (5mm)34.531534.622936.283628.0265
INF2Developing inflorescences (1-1.5 cm)44.961342.445140.193245.3012
ROORoots from the seedlings (10 cm shoot stage)8.2822912.2799.1679913.834
NODDeveloping tillers at six leaf stage, 3rd internode7.965089.0522212.063931.578
CAR5Developing grain, bracts removed (5 DPA)15.554816.743716.360215.4512
CAR15Developing grain, bracts removed (15 DPA)5.421544.565685.406510.8561



CDS Structure of MLOC_43313






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_43313.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249730.1NoneNoneNoneNone
MLOC_43313.2CUST_2578_PI427708080AvailableAvailablecontig_269363 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g42460.1 +3 0.0 645 338/531 (64%) 13101.m04358 protein BAH domain containing protein, expressed
TAIR PP10 AT5G11470.1 +3 1e-49 187 100/233 (43%) bromo-adjacent homology (BAH) domain-containing protein | chr5:3662757-3667041 REVERSE LENGTH=757