MLOC_43249 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.071978.462666.988828.22314
LEAShoots from the seedlings (10 cm shoot stage)6.158375.246635.924845.07833
INF1Young developing inflorescences (5mm)8.933069.324769.460488.82118
INF2Developing inflorescences (1-1.5 cm)8.569099.534039.1346811.3544
ROORoots from the seedlings (10 cm shoot stage)5.061747.58448.297159.54756
NODDeveloping tillers at six leaf stage, 3rd internode2.658833.383294.2235711.4599
CAR5Developing grain, bracts removed (5 DPA)6.648397.853057.107578.15441
CAR15Developing grain, bracts removed (15 DPA)2.82632.620621.969056.99027



CDS Structure of MLOC_43249






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_43249.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_43249.1CUST_17676_PI427708080AvailableAvailablecontig_268911 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6None-----
TAIR PP10 AT1G11780.1 +3 2e-59 199 102/175 (58%) oxidoreductase, 2OG-Fe(II) oxygenase family protein | chr1:3977614-3979177 REVERSE LENGTH=345