MLOC_43244 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.19636.483277.385677.52393
LEAShoots from the seedlings (10 cm shoot stage)2.859050.7401930.1283570.971712
INF1Young developing inflorescences (5mm)17.886914.45227.5350411.472
INF2Developing inflorescences (1-1.5 cm)10.676512.663411.00912.8939
ROORoots from the seedlings (10 cm shoot stage)2.997894.276143.300194.13986
NODDeveloping tillers at six leaf stage, 3rd internode0.1245340.03621360.1105610.129191
CAR5Developing grain, bracts removed (5 DPA)6.541277.48213.559166.03119
CAR15Developing grain, bracts removed (15 DPA)0.1669230.1521540.2999490.490804



CDS Structure of MLOC_43244






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_43244.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_43244.1CUST_12087_PI427708080AvailableAvailablecontig_268876 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g17100.1 -3 4e-62 197 118/151 (78%) 13103.m02043 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
TAIR PP10 AT5G02560.1 -3 3e-55 179 101/139 (73%) | Symbols: HTA12 | histone H2A 12 | chr5:575437-576456 FORWARD LENGTH=153