MLOC_43243 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.425144.203284.760295.85318
LEAShoots from the seedlings (10 cm shoot stage)12.52215.823517.002715.9863
INF1Young developing inflorescences (5mm)4.875716.623145.735286.83501
INF2Developing inflorescences (1-1.5 cm)3.387414.84354.492256.90281
ROORoots from the seedlings (10 cm shoot stage)1.246211.056321.53672.02028
NODDeveloping tillers at six leaf stage, 3rd internode9.969427.6616213.569129.7777
CAR5Developing grain, bracts removed (5 DPA)7.230557.241326.663810.1372
CAR15Developing grain, bracts removed (15 DPA)0.8211490.7839940.5625552.40376



CDS Structure of MLOC_43243






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_43243.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_43243.1CUST_6057_PI427708083AvailableAvailablecontig_268871 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g03990.1 +3 6e-66 212 120/146 (82%) 13103.m00405 protein signal recognition particle 43 kDa protein, chloroplast precursor, putative, expressed
TAIR PP10 AT2G47450.1 +3 1e-31 120 67/129 (52%) | Symbols: CAO, CPSRP43 | chloroplast signal recognition particle component (CAO) | chr2:19472781-19473902 FORWARD LENGTH=373