MLOC_43227 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.933542.452062.594052.09511
LEAShoots from the seedlings (10 cm shoot stage)1.964531.260860.9740121.02807
INF1Young developing inflorescences (5mm)5.628083.563584.953443.29719
INF2Developing inflorescences (1-1.5 cm)2.612522.942972.994782.56838
ROORoots from the seedlings (10 cm shoot stage)1.62621.52061.928571.47376
NODDeveloping tillers at six leaf stage, 3rd internode0.08232550.2088320.3305870.600011
CAR5Developing grain, bracts removed (5 DPA)0.03040640.013760.03280160.0242749
CAR15Developing grain, bracts removed (15 DPA)0.6312390.5436150.5096851.12327



CDS Structure of MLOC_43227






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_43227.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_43227.1CUST_12417_PI427708083AvailableAvailablecontig_268723 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g07500.1 +1 1e-135 432 217/262 (83%) 13101.m00764 protein alliin lyase precursor, putative, expressed
TAIR PP10 AT4G24670.2 +1 4e-85 288 146/255 (57%) | Symbols: TAR2 | tryptophan aminotransferase related 2 | chr4:12727940-12730694 REVERSE LENGTH=440