MLOC_43221 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains000.2749460.177447
LEAShoots from the seedlings (10 cm shoot stage)000.06374540.0569655
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)00.03285460.09914910.0728031
ROORoots from the seedlings (10 cm shoot stage)0.5624410.09041790.1548830.221483
NODDeveloping tillers at six leaf stage, 3rd internode000.01124690.0231231
CAR5Developing grain, bracts removed (5 DPA)0.3876380.2690240.1941850.263666
CAR15Developing grain, bracts removed (15 DPA)0.9164851.257040.6389122.06372



CDS Structure of MLOC_43221






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_43221.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_43221.1CUST_6053_PI427708083AvailableAvailablecontig_268656 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g47650.1 +3 7e-45 165 76/109 (70%) 13103.m05135 protein ankyrin, putative, expressed
TAIR PP10 AT3G04710.2 +3 2e-25 107 55/107 (51%) | Symbols: TPR10 | ankyrin repeat family protein | chr3:1278229-1280942 FORWARD LENGTH=455