MLOC_43199 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains167.328154.724103.305166.132
LEAShoots from the seedlings (10 cm shoot stage)3.784030.1698830.05923021.12235
INF1Young developing inflorescences (5mm)42.671967.461434.575351.7552
INF2Developing inflorescences (1-1.5 cm)7.69334.953664.642627.35238
ROORoots from the seedlings (10 cm shoot stage)292.731302.025227.001402.884
NODDeveloping tillers at six leaf stage, 3rd internode0.03952900.01962580.016384
CAR5Developing grain, bracts removed (5 DPA)2.82613.202682.327013.30879
CAR15Developing grain, bracts removed (15 DPA)3.218211.990424.447358.87797



CDS Structure of MLOC_43199






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_43199.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366670NoneNoneNoneNone
MLOC_43199.1CUST_224_PI427708083AvailableAvailablecontig_268507 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g40614.1 -2 2e-48 166 78/90 (87%) 13110.m03766 protein LTPL147 - Protease inhibitor/seed storage/LTP family protein precursor, expressed
TAIR PP10 AT4G12510.1 -2 4e-32 120 57/86 (66%) Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr4:7417414-7417803 REVERSE LENGTH=129