- Predicted Gene MLOC_43194
MLOC_43194 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 3.74569 | 2.143 | 2.67581 | 2.65033 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 2.34464 | 0.193525 | 0.90225 | 0.911292 |
INF1 | Young developing inflorescences (5mm) | 4.31633 | 6.33483 | 7.22042 | 5.59211 |
INF2 | Developing inflorescences (1-1.5 cm) | 5.40827 | 8.26908 | 6.07134 | 8.0932 |
ROO | Roots from the seedlings (10 cm shoot stage) | 3.24993 | 1.75995 | 3.81801 | 2.41229 |
NOD | Developing tillers at six leaf stage, 3rd internode | 1.15678 | 2.29943 | 0.692982 | 4.95908 |
CAR5 | Developing grain, bracts removed (5 DPA) | 8.91158 | 8.84278 | 8.45306 | 9.29701 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.395567 | 0.480563 | 0.566792 | 1.32035 |
CDS Structure of MLOC_43194
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_43194.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os07g37156.1 |
+3 |
2e-106 |
318 |
182/245 (74%) |
13107.m03821 protein expressed protein |
TAIR PP10 |
AT4G28100.1 |
+3 |
6e-64 |
207 |
117/210 (56%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18050.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:13965300-13966697 REVERSE LENGTH=304 |