MLOC_43194 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.745692.1432.675812.65033
LEAShoots from the seedlings (10 cm shoot stage)2.344640.1935250.902250.911292
INF1Young developing inflorescences (5mm)4.316336.334837.220425.59211
INF2Developing inflorescences (1-1.5 cm)5.408278.269086.071348.0932
ROORoots from the seedlings (10 cm shoot stage)3.249931.759953.818012.41229
NODDeveloping tillers at six leaf stage, 3rd internode1.156782.299430.6929824.95908
CAR5Developing grain, bracts removed (5 DPA)8.911588.842788.453069.29701
CAR15Developing grain, bracts removed (15 DPA)0.3955670.4805630.5667921.32035



CDS Structure of MLOC_43194






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_43194.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_43194.1CUST_12081_PI427708080AvailableAvailablecontig_268486 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g37156.1 +3 2e-106 318 182/245 (74%) 13107.m03821 protein expressed protein
TAIR PP10 AT4G28100.1 +3 6e-64 207 117/210 (56%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18050.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:13965300-13966697 REVERSE LENGTH=304