MLOC_43033 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.358196.8836911.83967.31523
LEAShoots from the seedlings (10 cm shoot stage)7.598735.260928.334025.79977
INF1Young developing inflorescences (5mm)6.338148.214410.08856.08235
INF2Developing inflorescences (1-1.5 cm)13.68189.030929.0353810.7969
ROORoots from the seedlings (10 cm shoot stage)18.60117.855827.7123510.6296
NODDeveloping tillers at six leaf stage, 3rd internode11.982918.277924.218454.3365
CAR5Developing grain, bracts removed (5 DPA)11.624310.82879.179739.28014
CAR15Developing grain, bracts removed (15 DPA)2.097052.834593.123745.19963



CDS Structure of MLOC_43033






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_43033.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_43033.1CUST_6027_PI427708083AvailableAvailablecontig_267286 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g05280.1 +1 1e-49 164 84/94 (89%) 13105.m00547 protein zinc finger family protein, putative, expressed
TAIR PP10 AT3G47990.1 +1 9e-38 132 66/91 (73%) | Symbols: SIS3 | SUGAR-INSENSITIVE 3 | chr3:17713367-17716051 REVERSE LENGTH=358