MLOC_4294 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 2.75059 | 12.9623 | 9.76659 | 9.48596 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 11.5339 | 7.98153 | 6.87734 | 7.63504 |
INF1 | Young developing inflorescences (5mm) | 56.9554 | 53.2935 | 45.986 | 43.5297 |
INF2 | Developing inflorescences (1-1.5 cm) | 48.6486 | 44.5927 | 40.8875 | 48.7477 |
ROO | Roots from the seedlings (10 cm shoot stage) | 2.51624 | 8.41039 | 5.11637 | 8.77079 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.213678 | 0.155616 | 0.292794 | 0.601437 |
CAR5 | Developing grain, bracts removed (5 DPA) | 13.9248 | 13.0741 | 15.7558 | 13.5742 |
CAR15 | Developing grain, bracts removed (15 DPA) | 5.815 | 5.01242 | 4.46677 | 11.8447 |
CDS Structure of MLOC_4294
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_4294.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os05g05860.1 |
+3 |
2e-69 |
254 |
200/685 (29%) |
13105.m00623 protein retrotransposon protein, putative, unclassified, expressed |
TAIR PP10 |
AT3G57660.1 |
+3 |
0.0 |
686 |
378/851 (44%) |
| Symbols: NRPA1 | nuclear RNA polymerase A1 | chr3:21353746-21362814 FORWARD LENGTH=1670 |