MLOC_4294 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.7505912.96239.766599.48596
LEAShoots from the seedlings (10 cm shoot stage)11.53397.981536.877347.63504
INF1Young developing inflorescences (5mm)56.955453.293545.98643.5297
INF2Developing inflorescences (1-1.5 cm)48.648644.592740.887548.7477
ROORoots from the seedlings (10 cm shoot stage)2.516248.410395.116378.77079
NODDeveloping tillers at six leaf stage, 3rd internode0.2136780.1556160.2927940.601437
CAR5Developing grain, bracts removed (5 DPA)13.924813.074115.755813.5742
CAR15Developing grain, bracts removed (15 DPA)5.8155.012424.4667711.8447



CDS Structure of MLOC_4294






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_4294.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_4294.1CUST_12053_PI427708080AvailableAvailablecontig_134974 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g05860.1 +3 2e-69 254 200/685 (29%) 13105.m00623 protein retrotransposon protein, putative, unclassified, expressed
TAIR PP10 AT3G57660.1 +3 0.0 686 378/851 (44%) | Symbols: NRPA1 | nuclear RNA polymerase A1 | chr3:21353746-21362814 FORWARD LENGTH=1670