MLOC_42926 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.03311.171710.4320550.906584
LEAShoots from the seedlings (10 cm shoot stage)3.090391.688042.70992.05628
INF1Young developing inflorescences (5mm)6.337135.522145.832764.31276
INF2Developing inflorescences (1-1.5 cm)9.828156.87126.983757.74907
ROORoots from the seedlings (10 cm shoot stage)0.8460831.813251.995171.83141
NODDeveloping tillers at six leaf stage, 3rd internode1.768361.894652.050355.76971
CAR5Developing grain, bracts removed (5 DPA)5.009725.468664.673574.20964
CAR15Developing grain, bracts removed (15 DPA)0.9518121.819711.882472.63367



CDS Structure of MLOC_42926






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_42926.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_42926.2CUST_6008_PI427708083AvailableAvailablecontig_266832 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g30540.1 +2 2e-121 330 156/162 (96%) 13112.m03112 protein ubiquitin carboxyl-terminal hydrolase, putative, expressed
TAIR PP10 AT5G06600.1 +2 7e-118 315 147/162 (91%) | Symbols: UBP12 | ubiquitin-specific protease 12 | chr5:2019545-2027834 REVERSE LENGTH=1116