MLOC_42821 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.3714510.88610.00811.251
LEAShoots from the seedlings (10 cm shoot stage)15.269818.629718.617117.0309
INF1Young developing inflorescences (5mm)11.44279.5217611.14869.67653
INF2Developing inflorescences (1-1.5 cm)12.253513.417612.596615.0814
ROORoots from the seedlings (10 cm shoot stage)4.463688.97076.7830811.9025
NODDeveloping tillers at six leaf stage, 3rd internode10.900512.650522.308355.1417
CAR5Developing grain, bracts removed (5 DPA)9.6495410.0510.820210.8165
CAR15Developing grain, bracts removed (15 DPA)1.590911.429381.735623.91302



CDS Structure of MLOC_42821






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_42821.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355701NoneNoneNoneNone
MLOC_42821.1CUST_2568_PI427708080AvailableAvailablecontig_266467 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g27060.1 +3 0.0 575 306/429 (71%) 13102.m02940 protein high mobility group, putative, expressed
TAIR PP10 AT1G04880.1 +3 3e-84 272 166/408 (41%) HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain | chr1:1376106-1378264 REVERSE LENGTH=448