- Predicted Gene MLOC_42821
MLOC_42821 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 7.37145 | 10.886 | 10.008 | 11.251 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 15.2698 | 18.6297 | 18.6171 | 17.0309 |
| INF1 | Young developing inflorescences (5mm) | 11.4427 | 9.52176 | 11.1486 | 9.67653 |
| INF2 | Developing inflorescences (1-1.5 cm) | 12.2535 | 13.4176 | 12.5966 | 15.0814 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 4.46368 | 8.9707 | 6.78308 | 11.9025 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 10.9005 | 12.6505 | 22.3083 | 55.1417 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 9.64954 | 10.05 | 10.8202 | 10.8165 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 1.59091 | 1.42938 | 1.73562 | 3.91302 |
CDS Structure of MLOC_42821
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_42821.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os02g27060.1 |
+3 |
0.0 |
575 |
306/429 (71%) |
13102.m02940 protein high mobility group, putative, expressed |
| TAIR PP10 |
AT1G04880.1 |
+3 |
3e-84 |
272 |
166/408 (41%) |
HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain | chr1:1376106-1378264 REVERSE LENGTH=448 |