MLOC_42799 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains001.514961.34539
LEAShoots from the seedlings (10 cm shoot stage)0.88390100.7847840.71556
INF1Young developing inflorescences (5mm)00.98174101.14732
INF2Developing inflorescences (1-1.5 cm)0.8275930.3754480.5558580.900536
ROORoots from the seedlings (10 cm shoot stage)00.51515101.99437
NODDeveloping tillers at six leaf stage, 3rd internode00.9831110.579113.8586
CAR5Developing grain, bracts removed (5 DPA)00.4704170.5604280.394166
CAR15Developing grain, bracts removed (15 DPA)0.5100011.618130.7709973.12961



CDS Structure of MLOC_42799






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_42799.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_42799.1CUST_5983_PI427708083AvailableAvailablecontig_26635 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g28770.1 -1 6e-21 86 42/53 (79%) 13109.m02839 protein patatin, putative, expressed
TAIR PP10 AT2G26560.1 -1 5e-14 66 27/46 (59%) | Symbols: PLP2, PLA IIA, PLA2A | phospholipase A 2A | chr2:11293912-11295708 REVERSE LENGTH=407