- Predicted Gene MLOC_42787
- Gene IDMLOC_42787
- Source Contig contig_2662653
MLOC_42787 FPKM values
FPKM by Treatment | FPKM by Replicate |
---|---|
There are no FPKM-by-treatment values calculated for this gene. | ![]() |
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|---|---|---|---|---|
EMB | 4-day embryos dissected from germinating grains | 10.4384 | 13.4713 | 9.76042 | 0 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 14.4974 | 16.0785 | 12.6703 | 0 |
INF1 | Young developing inflorescences (5mm) | 20.3531 | 23.4408 | 34.3933 | 0 |
INF2 | Developing inflorescences (1-1.5 cm) | 25.5801 | 28.6681 | 29.7437 | 0 |
ROO | Roots from the seedlings (10 cm shoot stage) | 6.00868 | 13.5726 | 16.0778 | 0 |
NOD | Developing tillers at six leaf stage, 3rd internode | 12.8276 | 15.901 | 18.4653 | 0 |
CAR5 | Developing grain, bracts removed (5 DPA) | 10.7723 | 13.3275 | 14.764 | 0 |
CAR15 | Developing grain, bracts removed (15 DPA) | 6.88977 | 4.76103 | 5.84306 | 0 |
CDS Structure of MLOC_42787
![](/morexGenes/blast_net_images/MLOC_42787_assembly3_WGSMorex_rbca.fasta_genes.png)
Members of Gene Cluster
This cluster has a confidence assignment of non-High Confidence.The gene has a transcript that is part of a cluster represented by AK375595
Cluster member | Probe ID | FPKM by replicate | FPKM by treatment | Source Contig |
---|---|---|---|---|
AK375595 | None | None | None | None |
MLOC_25955.1 | None | Available | None | contig_1724250 (Not mapped) |
MLOC_26084.1 | None | Available | None | contig_1734180 (Not mapped) |
MLOC_27249.1 | None | Available | None | contig_1816770 (Not mapped) |
MLOC_27778.1 | None | Available | None | contig_1862097 (Not mapped) |
MLOC_29259.1 | None | Available | None | contig_1988447 (Not mapped) |
MLOC_30532.1 | None | Available | None | contig_2105795 (Not mapped) |
MLOC_30962.1 | None | Available | None | contig_2143837 (Not mapped) |
MLOC_35046.1 | None | Available | None | contig_2454064 (Not mapped) |
MLOC_362.1 | None | Available | None | contig_1025514 (Not mapped) |
MLOC_42577.1 | None | Available | None | contig_265229 (Mapped) |
MLOC_42770.1 | None | Available | None | contig_2661814 (Not mapped) |
MLOC_42787.1 | None | Available | None | contig_2662653 (Not mapped) |
MLOC_509.1 | None | Available | None | contig_1035800 (Not mapped) |
MLOC_51947.1 | None | Available | Available | contig_371749 (Mapped) |
MLOC_58986.1 | None | Available | None | contig_431788 (Not mapped) |
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP6 | None | - | - | - | - | - |
TAIR PP10 | None | - | - | - | - | - |