MLOC_42591 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.215625.006255.7549910.2746
LEAShoots from the seedlings (10 cm shoot stage)8.351375.527625.906549.57939
INF1Young developing inflorescences (5mm)12.020811.567511.385620.0267
INF2Developing inflorescences (1-1.5 cm)23.06717.141521.343244.7066
ROORoots from the seedlings (10 cm shoot stage)3.106758.375577.2912720.6209
NODDeveloping tillers at six leaf stage, 3rd internode3.590149.8475911.442355.3015
CAR5Developing grain, bracts removed (5 DPA)26.933422.605214.102539.5506
CAR15Developing grain, bracts removed (15 DPA)4.410978.337697.0280229.1236



CDS Structure of MLOC_42591






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_42591.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_42591.1CUST_12024_PI427708080AvailableAvailablecontig_2652688 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g10770.1 +2 2e-20 84 37/51 (73%) 13103.m01208 protein helix-loop-helix DNA-binding domain containing protein
TAIR PP10 AT4G33880.1 +2 7e-20 81 37/51 (73%) | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 | chr4:16239566-16241052 REVERSE LENGTH=352