- Predicted Gene MLOC_42591
MLOC_42591 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 5.21562 | 5.00625 | 5.75499 | 10.2746 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 8.35137 | 5.52762 | 5.90654 | 9.57939 |
INF1 | Young developing inflorescences (5mm) | 12.0208 | 11.5675 | 11.3856 | 20.0267 |
INF2 | Developing inflorescences (1-1.5 cm) | 23.067 | 17.1415 | 21.3432 | 44.7066 |
ROO | Roots from the seedlings (10 cm shoot stage) | 3.10675 | 8.37557 | 7.29127 | 20.6209 |
NOD | Developing tillers at six leaf stage, 3rd internode | 3.59014 | 9.84759 | 11.4423 | 55.3015 |
CAR5 | Developing grain, bracts removed (5 DPA) | 26.9334 | 22.6052 | 14.1025 | 39.5506 |
CAR15 | Developing grain, bracts removed (15 DPA) | 4.41097 | 8.33769 | 7.02802 | 29.1236 |
CDS Structure of MLOC_42591
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_42591.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os03g10770.1 |
+2 |
2e-20 |
84 |
37/51 (73%) |
13103.m01208 protein helix-loop-helix DNA-binding domain containing protein |
TAIR PP10 |
AT4G33880.1 |
+2 |
7e-20 |
81 |
37/51 (73%) |
| Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 | chr4:16239566-16241052 REVERSE LENGTH=352 |