MLOC_42516 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains90.81665.1909111.30782.3763
LEAShoots from the seedlings (10 cm shoot stage)52.876714.553217.087422.1947
INF1Young developing inflorescences (5mm)56.26465.650554.621253.6456
INF2Developing inflorescences (1-1.5 cm)49.589952.349352.891461.5531
ROORoots from the seedlings (10 cm shoot stage)37.41338.550337.109142.8341
NODDeveloping tillers at six leaf stage, 3rd internode35.974216.280619.536441.6801
CAR5Developing grain, bracts removed (5 DPA)121.103105.655128.012125.965
CAR15Developing grain, bracts removed (15 DPA)15.727613.956319.418938.7828



CDS Structure of MLOC_42516






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_42516.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_42516.1CUST_5929_PI427708083AvailableAvailablecontig_264858 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g73790.1 -2 2e-38 134 66/77 (86%) 13101.m08055 protein NAD dependent epimerase/dehydratase family protein, putative, expressed
TAIR PP10 AT1G08200.1 -2 2e-33 119 58/78 (74%) | Symbols: AXS2 | UDP-D-apiose/UDP-D-xylose synthase 2 | chr1:2574259-2576609 REVERSE LENGTH=389