morexGenes - Barley RNA-seq Database

Predicted Gene MLOC_42505

Gene IDMLOC_42505
Source Contig contig_2647798

Gene Data

|FPKM Values|
|CDS Structures|
|Gene Cluster Members|
|Homology to Models|

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MLOC_42505 FPKM values

FPKM by Treatment	FPKM by Replicate
There are no FPKM-by-treatment values calculated for this gene.

Treatment ID	Treatment Description	Rep 1 FPKM	Rep 2 FPKM	Rep 3 FPKM	Treatment FPKM
EMB	4-day embryos dissected from germinating grains	1.94092	3.16585	3.59115	0
LEA	Shoots from the seedlings (10 cm shoot stage)	1.37105	2.12692	2.51747	0
INF1	Young developing inflorescences (5mm)	3.94654	5.22545	6.99406	0
INF2	Developing inflorescences (1-1.5 cm)	10.4198	7.32024	7.24934	0
ROO	Roots from the seedlings (10 cm shoot stage)	1.16357	2.5305	3.23919	0
NOD	Developing tillers at six leaf stage, 3rd internode	2.47847	5.09795	3.85129	0
CAR5	Developing grain, bracts removed (5 DPA)	5.69149	3.61056	4.60061	0
CAR15	Developing grain, bracts removed (15 DPA)	3.11079	2.6512	5.60076	0

CDS Structure of MLOC_42505

Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by AK364453

Cluster member	Probe ID	FPKM by replicate	FPKM by treatment	Source Contig
AK364453	CUST_14197_PI427708083	None	None	None
MLOC_2070.1	None	Available	None	contig_1183612 (Not mapped)
MLOC_23909.1	None	Available	Available	contig_163205 (Mapped)
MLOC_26565.1	None	Available	None	contig_1764403 (Mapped)
MLOC_28428.2	None	Available	None	contig_1917577 (Not mapped)
MLOC_31572.1	None	Available	None	contig_2201734 (Not mapped)
MLOC_41032.1	None	Available	None	contig_2569540 (Not mapped)
MLOC_41072.1	None	Available	None	contig_2570795 (Not mapped)
MLOC_41946.1	None	Available	None	contig_2615064 (Not mapped)
MLOC_42505.1	None	Available	None	contig_2647798 (Not mapped)
MLOC_46857.1	None	Available	None	contig_296795 (Not mapped)
MLOC_526.1	None	Available	None	contig_1037867 (Not mapped)
MLOC_57072.2	None	Available	None	contig_413977 (Not mapped)
MLOC_64848.1	None	Available	None	contig_493955 (Not mapped)
MLOC_68109.1	None	Available	None	contig_542123 (Not mapped)

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP6	None	-	-	-	-	-
TAIR PP10	None	-	-	-	-	-