MLOC_42465 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.189893.525632.58143.03355
LEAShoots from the seedlings (10 cm shoot stage)1.999942.633892.77992.02006
INF1Young developing inflorescences (5mm)4.676464.794274.042683.88531
INF2Developing inflorescences (1-1.5 cm)3.886354.061113.359134.25005
ROORoots from the seedlings (10 cm shoot stage)1.360322.742212.800852.90464
NODDeveloping tillers at six leaf stage, 3rd internode1.184111.109462.293173.80293
CAR5Developing grain, bracts removed (5 DPA)5.373446.152545.119765.51125
CAR15Developing grain, bracts removed (15 DPA)1.538341.567630.9663563.47558



CDS Structure of MLOC_42465






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_42465.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248342.1NoneNoneNoneNone
MLOC_42465.2NoneAvailableAvailablecontig_2645907 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g28060.1 +3 8e-79 252 142/206 (69%) 13104.m02656 protein expressed protein
TAIR PP10 AT2G43110.1 +3 1e-35 135 75/202 (37%) unknown protein; Has 212 Blast hits to 211 proteins in 96 species: Archae - 0; Bacteria - 6; Metazoa - 62; Fungi - 91; Plants - 31; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). | chr2:17922067-17924291 FORWARD LENGTH=288