- Predicted Gene MLOC_42452
- Gene IDMLOC_42452
- Source Contig contig_2645397
MLOC_42452 FPKM values
FPKM by Treatment | FPKM by Replicate |
---|---|
There are no FPKM-by-treatment values calculated for this gene. | ![]() |
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|---|---|---|---|---|
EMB | 4-day embryos dissected from germinating grains | 1.06139 | 3.15461 | 2.09045 | 0 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 4.76377 | 0.849858 | 3.75386 | 0 |
INF1 | Young developing inflorescences (5mm) | 3.94132 | 5.34523 | 2.7146 | 0 |
INF2 | Developing inflorescences (1-1.5 cm) | 7.96834 | 4.32677 | 5.78063 | 0 |
ROO | Roots from the seedlings (10 cm shoot stage) | 1.7922 | 1.45448 | 3.05223 | 0 |
NOD | Developing tillers at six leaf stage, 3rd internode | 3.85474 | 3.0314 | 2.12091 | 0 |
CAR5 | Developing grain, bracts removed (5 DPA) | 4.41758 | 2.50975 | 3.0472 | 0 |
CAR15 | Developing grain, bracts removed (15 DPA) | 1.91877 | 1.51781 | 3.62828 | 0 |
CDS Structure of MLOC_42452
![](/morexGenes/blast_net_images/MLOC_42452_assembly3_WGSMorex_rbca.fasta_genes.png)
Members of Gene Cluster
This cluster has a confidence assignment of High Confidence.The gene has a transcript that is part of a cluster represented by AK249301.1
Cluster member | Probe ID | FPKM by replicate | FPKM by treatment | Source Contig |
---|---|---|---|---|
AK249301.1 | CUST_23254_PI427708080 | None | None | None |
MLOC_13145.1 | None | Available | None | contig_156493 (Mapped) |
MLOC_1912.1 | None | Available | None | contig_1170319 (Not mapped) |
MLOC_2544.1 | None | Available | None | contig_1226734 (Not mapped) |
MLOC_2887.1 | None | Available | None | contig_1257715 (Not mapped) |
MLOC_29047.1 | None | Available | None | contig_1969596 (Not mapped) |
MLOC_30776.1 | None | Available | None | contig_21252 (Not mapped) |
MLOC_33489.1 | None | Available | None | contig_237800 (Not mapped) |
MLOC_35846.1 | None | Available | None | contig_252373 (Mapped) |
MLOC_41311.1 | None | Available | None | contig_2582226 (Not mapped) |
MLOC_42452.1 | None | Available | None | contig_2645397 (Not mapped) |
MLOC_46466.1 | None | Available | None | contig_290832 (Mapped) |
MLOC_47434.1 | None | Available | None | contig_306050 (Mapped) |
MLOC_48547.1 | None | Available | Available | contig_325745 (Not mapped) |
MLOC_59622.1 | None | Available | None | contig_437690 (Mapped) |
MLOC_80103.1 | None | Available | None | contig_886570 (Not mapped) |
MLOC_955.1 | None | Available | None | contig_1079535 (Mapped) |
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP6 | None | - | - | - | - | - |
TAIR PP10 | None | - | - | - | - | - |