MLOC_42415 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0001.40903
LEAShoots from the seedlings (10 cm shoot stage)0.358776000.940124
INF1Young developing inflorescences (5mm)1.651971.217650.9426012.87072
INF2Developing inflorescences (1-1.5 cm)1.461771.837491.724784.73177
ROORoots from the seedlings (10 cm shoot stage)00.25584703.45928
NODDeveloping tillers at six leaf stage, 3rd internode0.3116030.6514220.355785.18525
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)0.171285001.11147



CDS Structure of MLOC_42415






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_42415.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_42415.1CUST_12006_PI427708080AvailableAvailablecontig_2642658 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g29620.1 +2 4e-25 99 44/53 (83%) 13107.m02977 protein OsSCP39 - Putative Serine Carboxypeptidase homologue, expressed
TAIR PP10 AT3G10410.1 +2 2e-24 96 42/53 (79%) | Symbols: SCPL49, CPY | SERINE CARBOXYPEPTIDASE-LIKE 49 | chr3:3235518-3238063 REVERSE LENGTH=516