MLOC_42413 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.022442.27692.797532.057
LEAShoots from the seedlings (10 cm shoot stage)3.754643.835463.104722.63077
INF1Young developing inflorescences (5mm)3.711964.752796.657663.31908
INF2Developing inflorescences (1-1.5 cm)7.862467.114156.985387.16297
ROORoots from the seedlings (10 cm shoot stage)4.017136.545093.470195.51382
NODDeveloping tillers at six leaf stage, 3rd internode3.884615.425675.7579714.8975
CAR5Developing grain, bracts removed (5 DPA)6.121694.234817.128274.74127
CAR15Developing grain, bracts removed (15 DPA)3.386451.880561.540185.13033



CDS Structure of MLOC_42413






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_42413.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_42413.1CUST_12396_PI427708083AvailableAvailablecontig_2642528 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g03990.1 +1 2e-18 82 39/48 (81%) 13106.m00345 protein aminotransferase, classes I and II, domain containing protein, expressed
TAIR PP10 AT5G51690.1 +1 5e-14 69 29/50 (58%) | Symbols: ACS12 | 1-amino-cyclopropane-1-carboxylate synthase 12 | chr5:20999015-21000957 REVERSE LENGTH=495