MLOC_42279 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.880056.004476.576886.7223
LEAShoots from the seedlings (10 cm shoot stage)17.73211.891418.867212.9696
INF1Young developing inflorescences (5mm)9.7198211.762511.682410.234
INF2Developing inflorescences (1-1.5 cm)7.007317.077137.701098.54567
ROORoots from the seedlings (10 cm shoot stage)3.801653.155784.64793.65566
NODDeveloping tillers at six leaf stage, 3rd internode13.086212.96320.476838.7026
CAR5Developing grain, bracts removed (5 DPA)10.314412.26998.2966810.8626
CAR15Developing grain, bracts removed (15 DPA)0.3198350.3109890.3864530.8657



CDS Structure of MLOC_42279






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_42279.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250887.1NoneNoneNoneNone
MLOC_42279.1CUST_2566_PI427708080AvailableAvailablecontig_263534 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g48600.1 -1 1e-63 198 97/115 (84%) 13106.m05168 protein macrophage migration inhibitory factor, putative, expressed
TAIR PP10 AT5G57170.1 -1 4e-45 150 71/115 (62%) Tautomerase/MIF superfamily protein | chr5:23162201-23163140 REVERSE LENGTH=115