MLOC_4225 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains85.5317123.989112.184101.808
LEAShoots from the seedlings (10 cm shoot stage)144.699181.8152.852116.553
INF1Young developing inflorescences (5mm)74.739679.28877.99166.0346
INF2Developing inflorescences (1-1.5 cm)111.195107.21998.5967114.708
ROORoots from the seedlings (10 cm shoot stage)312.756249.06274.231246.621
NODDeveloping tillers at six leaf stage, 3rd internode120.89164.3182.315380.776
CAR5Developing grain, bracts removed (5 DPA)370.438406.973332.445350.17
CAR15Developing grain, bracts removed (15 DPA)60.671846.359157.2629130.841



CDS Structure of MLOC_4225






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_4225.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_4225.2CUST_5890_PI427708083AvailableAvailablecontig_134870 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g49200.2 +1 3e-72 233 122/146 (84%) 13105.m05261 protein aspartic proteinase oryzasin-1 precursor, putative, expressed
TAIR PP10 AT1G11910.1 +1 2e-53 182 86/140 (61%) | Symbols: APA1, ATAPA1 | aspartic proteinase A1 | chr1:4017119-4019874 REVERSE LENGTH=506