MLOC_42239 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains000.5547540.435377
LEAShoots from the seedlings (10 cm shoot stage)0.6237442.148912.755421.81547
INF1Young developing inflorescences (5mm)2.523111.4207201.40087
INF2Developing inflorescences (1-1.5 cm)2.074754.525411.452193.90253
ROORoots from the seedlings (10 cm shoot stage)00.8876383.354282.34839
NODDeveloping tillers at six leaf stage, 3rd internode0.2855630.6890170.5738682.15674
CAR5Developing grain, bracts removed (5 DPA)3.17653.277841.823523.21551
CAR15Developing grain, bracts removed (15 DPA)1.259811.794722.377064.37768



CDS Structure of MLOC_42239






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_42239.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_42239.1CUST_11988_PI427708080AvailableAvailablecontig_2632787 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g21840.1 +1 4e-12 62 32/65 (49%) 13102.m02448 protein retrotransposon protein, putative, unclassified
TAIR PP10None-----