MLOC_42158 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.36015.997366.727284.14038
LEAShoots from the seedlings (10 cm shoot stage)9.087639.480211.37336.50308
INF1Young developing inflorescences (5mm)13.091612.530610.23877.328
INF2Developing inflorescences (1-1.5 cm)8.844696.758937.159776.45014
ROORoots from the seedlings (10 cm shoot stage)2.716765.227547.83754.34334
NODDeveloping tillers at six leaf stage, 3rd internode9.7337412.852322.004437.6971
CAR5Developing grain, bracts removed (5 DPA)4.403324.947256.006473.42787
CAR15Developing grain, bracts removed (15 DPA)0.6806950.2719461.005050.979145



CDS Structure of MLOC_42158






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_42158.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_42158.1NoneAvailableAvailablecontig_2627497 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g63330.1 +3 2e-22 97 48/53 (91%) 13103.m07019 protein aspartokinase, chloroplast precursor, putative, expressed
TAIR PP10 AT5G13280.1 +3 7e-21 92 50/74 (68%) | Symbols: AK-LYS1, AK1, AK | aspartate kinase 1 | chr5:4249516-4252654 FORWARD LENGTH=569