MLOC_42110 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.413310.447413.200913.4386
LEAShoots from the seedlings (10 cm shoot stage)14.55056.240156.117118.88178
INF1Young developing inflorescences (5mm)10.583611.506312.36711.6361
INF2Developing inflorescences (1-1.5 cm)20.885819.199220.86825.3627
ROORoots from the seedlings (10 cm shoot stage)17.858920.617819.417231.9464
NODDeveloping tillers at six leaf stage, 3rd internode19.837317.81559.3564972.1445
CAR5Developing grain, bracts removed (5 DPA)25.381824.585225.006229.2231
CAR15Developing grain, bracts removed (15 DPA)11.34189.312647.6422127.5202



CDS Structure of MLOC_42110






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_42110.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_42110.1CUST_17674_PI427708080AvailableAvailablecontig_2625222 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g13680.1 +2 6e-20 81 37/44 (84%) 13106.m01510 protein B12D protein, putative, expressed
TAIR PP10 AT3G48140.1 +2 1e-11 58 25/43 (58%) B12D protein | chr3:17778471-17779299 FORWARD LENGTH=88