morexGenes - Barley RNA-seq Database

Predicted Gene MLOC_41972

Gene IDMLOC_41972
Source Contig contig_2616564

Gene Data

|FPKM Values|
|CDS Structures|
|Gene Cluster Members|
|Homology to Models|

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MLOC_41972 FPKM values

FPKM by Treatment	FPKM by Replicate
There are no FPKM-by-treatment values calculated for this gene.

Treatment ID	Treatment Description	Rep 1 FPKM	Rep 2 FPKM	Rep 3 FPKM	Treatment FPKM
EMB	4-day embryos dissected from germinating grains	3.465	7.58745	6.94407	0
LEA	Shoots from the seedlings (10 cm shoot stage)	3.89089	5.75812	4.53178	0
INF1	Young developing inflorescences (5mm)	18.7014	13.9461	10.4678	0
INF2	Developing inflorescences (1-1.5 cm)	17.8852	13.8769	13.2299	0
ROO	Roots from the seedlings (10 cm shoot stage)	2.5788	6.38615	6.16806	0
NOD	Developing tillers at six leaf stage, 3rd internode	3.9908	3.21683	3.10828	0
CAR5	Developing grain, bracts removed (5 DPA)	13.589	12.0376	10.6818	0
CAR15	Developing grain, bracts removed (15 DPA)	6.93774	6.22795	7.13069	0

CDS Structure of MLOC_41972

Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by AK365455

Cluster member	Probe ID	FPKM by replicate	FPKM by treatment	Source Contig
AK365455	CUST_21100_PI427708080	None	None	None
MLOC_22499.1	None	Available	None	contig_1607697 (Mapped)
MLOC_2880.1	None	Available	None	contig_1256906 (Not mapped)
MLOC_33449.3	None	Available	None	contig_237464 (Mapped)
MLOC_33747.1	None	Available	None	contig_2399409 (Not mapped)
MLOC_35767.2	None	Available	None	contig_252128 (Not mapped)
MLOC_36016.1	None	Available	None	contig_2530629 (Not mapped)
MLOC_38288.1	None	Available	Available	contig_2550115 (Mapped)
MLOC_40505.2	None	Available	None	contig_2560483 (Mapped)
MLOC_41972.1	None	Available	None	contig_2616564 (Not mapped)
MLOC_43895.1	None	Available	None	contig_273304 (Mapped)
MLOC_50023.1	None	Available	None	contig_352781 (Not mapped)
MLOC_6144.1	None	Available	None	contig_1371210 (Not mapped)
MLOC_81206.1	None	Available	None	contig_950532 (Not mapped)

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP6	None	-	-	-	-	-
TAIR PP10	None	-	-	-	-	-