MLOC_41939 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)02.42872.055363.00327
INF1Young developing inflorescences (5mm)03.6829102.96163
INF2Developing inflorescences (1-1.5 cm)1.04087001.27149
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode01.528411.54616.6369
CAR5Developing grain, bracts removed (5 DPA)01.1791901.23635
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_41939






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_41939.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_41939.1CUST_5855_PI427708083AvailableAvailablecontig_261478 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g35900.2 +2 8e-21 83 37/45 (82%) 13102.m03909 protein thioredoxin, putative, expressed
TAIR PP10 AT1G07700.2 +2 3e-18 74 33/45 (73%) Thioredoxin superfamily protein | chr1:2380214-2380939 FORWARD LENGTH=171