MLOC_41917 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.83181903.75064
LEAShoots from the seedlings (10 cm shoot stage)00.95574501.20668
INF1Young developing inflorescences (5mm)000.2834981.00581
INF2Developing inflorescences (1-1.5 cm)0.7146810.6314641.701193.2583
ROORoots from the seedlings (10 cm shoot stage)0002.85773
NODDeveloping tillers at six leaf stage, 3rd internode00.5654040.6071673.80374
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)0.201877000.879131



CDS Structure of MLOC_41917






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_41917.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_41917.1CUST_11957_PI427708080AvailableAvailablecontig_2613711 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g29620.1 +1 2e-23 94 39/45 (87%) 13107.m02977 protein OsSCP39 - Putative Serine Carboxypeptidase homologue, expressed
TAIR PP10 AT3G10410.1 +1 4e-22 89 38/49 (78%) | Symbols: SCPL49, CPY | SERINE CARBOXYPEPTIDASE-LIKE 49 | chr3:3235518-3238063 REVERSE LENGTH=516