MLOC_41860 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains26.321622.043425.902116.6732
LEAShoots from the seedlings (10 cm shoot stage)32.527134.620646.955322.4696
INF1Young developing inflorescences (5mm)18.059522.268726.603311.8769
INF2Developing inflorescences (1-1.5 cm)14.13214.704813.97211.3612
ROORoots from the seedlings (10 cm shoot stage)44.197838.273840.165931.5101
NODDeveloping tillers at six leaf stage, 3rd internode31.005832.181733.897577.9555
CAR5Developing grain, bracts removed (5 DPA)11.945111.10310.28487.45043
CAR15Developing grain, bracts removed (15 DPA)2.95493.945513.585954.93159



CDS Structure of MLOC_41860






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_41860.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_41860.1CUST_12384_PI427708083AvailableAvailablecontig_261040 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g40140.1 -3 3e-48 167 82/86 (95%) 13111.m03969 protein peptidase, T1 family, putative, expressed
TAIR PP10 AT1G53850.2 -3 7e-47 162 80/86 (93%) | Symbols: PAE1 | 20S proteasome alpha subunit E1 | chr1:20104131-20105792 REVERSE LENGTH=237