MLOC_41808 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.83152.879162.86012.79495
LEAShoots from the seedlings (10 cm shoot stage)2.932313.730643.727633.07141
INF1Young developing inflorescences (5mm)5.422573.919195.487484.39031
INF2Developing inflorescences (1-1.5 cm)8.249773.757395.154846.26946
ROORoots from the seedlings (10 cm shoot stage)4.570243.708485.507575.03786
NODDeveloping tillers at six leaf stage, 3rd internode3.268561.521982.75324.50715
CAR5Developing grain, bracts removed (5 DPA)1.458351.199411.768071.60279
CAR15Developing grain, bracts removed (15 DPA)0.2484850.4532410.4330150.960656



CDS Structure of MLOC_41808






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_41808.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_41808.1CUST_5840_PI427708083AvailableAvailablecontig_260742 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g70380.1 +2 5e-28 114 55/64 (86%) 13101.m07647 protein serine palmitoyltransferase 2, putative, expressed
TAIR PP10 AT5G23670.2 +2 1e-21 95 44/64 (69%) | Symbols: LCB2 | long chain base2 | chr5:7981889-7985037 FORWARD LENGTH=489