morexGenes - Barley RNA-seq Database

Predicted Gene MLOC_41647

Gene IDMLOC_41647
Source Contig contig_2599177

Gene Data

|FPKM Values|
|CDS Structures|
|Gene Cluster Members|
|Homology to Models|

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MLOC_41647 FPKM values

FPKM by Treatment	FPKM by Replicate

Treatment ID	Treatment Description	Rep 1 FPKM	Rep 2 FPKM	Rep 3 FPKM	Treatment FPKM
EMB	4-day embryos dissected from germinating grains	0	0.590272	0.150704	0.436693
LEA	Shoots from the seedlings (10 cm shoot stage)	0.530399	0.537732	0.890403	0.668105
INF1	Young developing inflorescences (5mm)	0.779085	1.67485	0.82599	1.12834
INF2	Developing inflorescences (1-1.5 cm)	1.42945	1.37554	2.0311	1.93053
ROO	Roots from the seedlings (10 cm shoot stage)	0	0.426392	0	0.883732
NOD	Developing tillers at six leaf stage, 3rd internode	0.427203	0.615474	0.945563	2.8144
CAR5	Developing grain, bracts removed (5 DPA)	1.64466	0.929833	0.995273	1.30229
CAR15	Developing grain, bracts removed (15 DPA)	0.684324	0.307473	0.586419	1.45418

CDS Structure of MLOC_41647

Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by AK358750

Cluster member	Probe ID	FPKM by replicate	FPKM by treatment	Source Contig
AK358750	CUST_14084_PI427708083	None	None	None
MLOC_25522.1	None	Available	None	contig_1697118 (Not mapped)
MLOC_27824.1	None	Available	None	contig_1866405 (Mapped)
MLOC_29989.1	None	Available	None	contig_2054947 (Not mapped)
MLOC_30097.1	None	Available	None	contig_2064798 (Not mapped)
MLOC_30643.1	None	Available	None	contig_211603 (Mapped)
MLOC_35260.2	None	Available	None	contig_2468592 (Not mapped)
MLOC_35643.1	None	Available	None	contig_2511155 (Not mapped)
MLOC_41647.1	None	Available	Available	contig_2599177 (Mapped)
MLOC_50720.1	None	Available	None	contig_365103 (Mapped)
MLOC_69790.1	None	Available	None	contig_56955 (Mapped)
MLOC_77620.1	None	Available	None	contig_764274 (Not mapped)
MLOC_79519.1	None	Available	None	contig_854122 (Not mapped)
MLOC_8396.1	None	Available	None	contig_1424649 (Not mapped)

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP6	None	-	-	-	-	-
TAIR PP10	None	-	-	-	-	-