MLOC_41510 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.18313.700761.054221.84236
LEAShoots from the seedlings (10 cm shoot stage)1.245043.435192.377491.51845
INF1Young developing inflorescences (5mm)3.083374.631174.284462.62379
INF2Developing inflorescences (1-1.5 cm)7.1915.057045.659315.50909
ROORoots from the seedlings (10 cm shoot stage)1.356172.415382.175442.09357
NODDeveloping tillers at six leaf stage, 3rd internode2.084351.653072.060654.47032
CAR5Developing grain, bracts removed (5 DPA)2.860653.722983.280072.77197
CAR15Developing grain, bracts removed (15 DPA)0.7571351.124021.566922.12938



CDS Structure of MLOC_41510






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_41510.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_41510.2CUST_5796_PI427708083AvailableAvailablecontig_2592292 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g02150.2 +1 1e-19 87 42/51 (82%) 13104.m00133 protein tRNA methyltransferase, putative, expressed
TAIR PP10 AT2G45730.1 +1 7e-15 72 35/51 (69%) eukaryotic initiation factor 3 gamma subunit family protein | chr2:18836519-18839123 REVERSE LENGTH=446