MLOC_41094 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)001.311241.03833
INF1Young developing inflorescences (5mm)2.150165.933962.728412.96151
INF2Developing inflorescences (1-1.5 cm)3.679361.740333.218692.92258
ROORoots from the seedlings (10 cm shoot stage)00.85195503.54881
NODDeveloping tillers at six leaf stage, 3rd internode01.4180.6301855.53807
CAR5Developing grain, bracts removed (5 DPA)2.365880.70637401.46008
CAR15Developing grain, bracts removed (15 DPA)0.7758651.671203.26065



CDS Structure of MLOC_41094






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_41094.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_41094.1CUST_5738_PI427708083AvailableAvailablecontig_257198 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g62040.2 +2 6e-24 93 45/46 (98%) 13101.m06633 protein ruvB-like, putative, expressed
TAIR PP10 AT5G22330.1 +2 4e-22 88 43/46 (93%) | Symbols: ATTIP49A, RIN1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:7391026-7394071 REVERSE LENGTH=458