MLOC_41065 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.874781.39792.579063.55231
LEAShoots from the seedlings (10 cm shoot stage)1.1223800.3956551.27344
INF1Young developing inflorescences (5mm)4.612553.761365.858557.49625
INF2Developing inflorescences (1-1.5 cm)3.125825.605676.00518.40804
ROORoots from the seedlings (10 cm shoot stage)2.776580.7681532.640411.94955
NODDeveloping tillers at six leaf stage, 3rd internode00.11290.5187391.11129
CAR5Developing grain, bracts removed (5 DPA)0.9208432.762380.2296992.67641
CAR15Developing grain, bracts removed (15 DPA)0.37652800.8510931.19377



CDS Structure of MLOC_41065






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_41065.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_41065.1CUST_5731_PI427708083AvailableAvailablecontig_2570553 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g02300.1 -2 2e-18 77 35/44 (80%) 13105.m00194 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
TAIR PP10 AT5G59870.1 -2 1e-17 74 33/44 (75%) | Symbols: HTA6 | histone H2A 6 | chr5:24115605-24116144 REVERSE LENGTH=150