MLOC_40833 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.0753116000.0531556
LEAShoots from the seedlings (10 cm shoot stage)0.101265000.0932563
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.0560063000.069963
ROORoots from the seedlings (10 cm shoot stage)15.98934.718667.105417.99704
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0.1330290.062556700.106316
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_40833






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_40833.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_40833.1CUST_5703_PI427708083AvailableAvailablecontig_2565382 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g01270.1 +1 1e-110 325 152/196 (78%) 13103.m00042 protein expansin precursor, putative, expressed
TAIR PP10 AT1G65680.1 +1 5e-58 187 93/187 (50%) | Symbols: ATEXPB2, EXPB2, ATHEXP BETA 1.4 | expansin B2 | chr1:24427266-24428399 FORWARD LENGTH=273