MLOC_40653 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.6951215.65929.7890610.3014
LEAShoots from the seedlings (10 cm shoot stage)2.135212.266530.1504211.20338
INF1Young developing inflorescences (5mm)2.639513.909514.381143.07842
INF2Developing inflorescences (1-1.5 cm)3.332773.441663.502843.88252
ROORoots from the seedlings (10 cm shoot stage)1.424922.621373.100162.76442
NODDeveloping tillers at six leaf stage, 3rd internode2.218160.4387214.173883.22816
CAR5Developing grain, bracts removed (5 DPA)6.578687.498084.852186.42517
CAR15Developing grain, bracts removed (15 DPA)2.282010.8336631.608133.91901



CDS Structure of MLOC_40653






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_40653.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_40653.1NoneAvailableAvailablecontig_2562527 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g39020.1 +2 2e-36 135 66/85 (78%) 13104.m03766 protein aldehyde dehydrogenase, putative, expressed
TAIR PP10 AT3G48170.1 +2 6e-29 114 56/80 (70%) | Symbols: ALDH10A9 | aldehyde dehydrogenase 10A9 | chr3:17786290-17789918 REVERSE LENGTH=503