MLOC_40613 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.355722.205411.709171.37396
LEAShoots from the seedlings (10 cm shoot stage)17.627839.828519.263315.4749
INF1Young developing inflorescences (5mm)0.9084991.459260.8372780.728101
INF2Developing inflorescences (1-1.5 cm)1.263430.6357010.8340080.861124
ROORoots from the seedlings (10 cm shoot stage)0.261041.136663.351981.04253
NODDeveloping tillers at six leaf stage, 3rd internode2.956551.109222.849613.12576
CAR5Developing grain, bracts removed (5 DPA)0.6946980.7541992.866211.02168
CAR15Developing grain, bracts removed (15 DPA)0.5387390.3528020.3149970.918167



CDS Structure of MLOC_40613






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_40613.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_40613.1CUST_12347_PI427708083AvailableAvailablecontig_2561896 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g22520.1 -3 1e-14 74 34/36 (94%) 13101.m02388 protein dihydrolipoyl dehydrogenase 1, mitochondrial precursor, putative, expressed
TAIR PP10 AT3G17240.2 -3 2e-16 74 35/36 (97%) | Symbols: mtLPD2 | lipoamide dehydrogenase 2 | chr3:5891783-5892166 REVERSE LENGTH=127