MLOC_40573 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.1048970.05297790.134472
LEAShoots from the seedlings (10 cm shoot stage)0.0632007000.0641996
INF1Young developing inflorescences (5mm)000.08748460.128013
INF2Developing inflorescences (1-1.5 cm)0.06163040.08406840.04178840.0847167
ROORoots from the seedlings (10 cm shoot stage)0.0658960.07293300.153036
NODDeveloping tillers at six leaf stage, 3rd internode0.0623120.0469720.02043460.170807
CAR5Developing grain, bracts removed (5 DPA)146.063132.516141.217147.737
CAR15Developing grain, bracts removed (15 DPA)13.433216.612828.831542.2373



CDS Structure of MLOC_40573






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_40573.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_40573.1CUST_5670_PI427708083AvailableAvailablecontig_2561346 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g43010.1 +2 0.0 536 253/364 (70%) 13102.m04770 protein vacuolar-processing enzyme precursor, putative, expressed
TAIR PP10 AT1G62710.1 +2 4e-154 449 217/366 (59%) | Symbols: BETA-VPE, BETAVPE | beta vacuolar processing enzyme | chr1:23224070-23226857 REVERSE LENGTH=486