MLOC_4057 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.802055.925695.17454.85109
LEAShoots from the seedlings (10 cm shoot stage)21.492926.770126.10219.1683
INF1Young developing inflorescences (5mm)4.636175.362885.388923.681
INF2Developing inflorescences (1-1.5 cm)4.225954.154754.966884.18215
ROORoots from the seedlings (10 cm shoot stage)2.504383.783863.386753.79694
NODDeveloping tillers at six leaf stage, 3rd internode15.160213.511915.241743.1837
CAR5Developing grain, bracts removed (5 DPA)5.392645.199935.091194.42849
CAR15Developing grain, bracts removed (15 DPA)1.741021.852452.281983.56513



CDS Structure of MLOC_4057






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_4057.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_4057.1CUST_12344_PI427708083AvailableAvailablecontig_134627 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g13460.1 -2 2e-145 440 215/239 (90%) 13112.m01432 protein SET domain-containing protein, putative, expressed
TAIR PP10 AT5G14260.2 -2 3e-115 361 171/239 (72%) Rubisco methyltransferase family protein | chr5:4601139-4603873 FORWARD LENGTH=514