morexGenes - Barley RNA-seq Database

Predicted Gene MLOC_40540

Gene IDMLOC_40540
Source Contig contig_2560861

Gene Data

|FPKM Values|
|CDS Structures|
|Gene Cluster Members|
|Homology to Models|

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MLOC_40540 FPKM values

FPKM by Treatment	FPKM by Replicate
There are no FPKM-by-treatment values calculated for this gene.

Treatment ID	Treatment Description	Rep 1 FPKM	Rep 2 FPKM	Rep 3 FPKM	Treatment FPKM
EMB	4-day embryos dissected from germinating grains	4.48644	8.26325	7.27341	0
LEA	Shoots from the seedlings (10 cm shoot stage)	15.0651	21.5006	13.9721	0
INF1	Young developing inflorescences (5mm)	15.0659	12.9256	13.3615	0
INF2	Developing inflorescences (1-1.5 cm)	13.5189	16.3008	15.9058	0
ROO	Roots from the seedlings (10 cm shoot stage)	3.16895	7.91388	7.83029	0
NOD	Developing tillers at six leaf stage, 3rd internode	9.49789	12.3198	14.5734	0
CAR5	Developing grain, bracts removed (5 DPA)	13.4954	12.258	14.6282	0
CAR15	Developing grain, bracts removed (15 DPA)	6.93049	7.62312	6.46327	0

CDS Structure of MLOC_40540

Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by AK355680

Cluster member	Probe ID	FPKM by replicate	FPKM by treatment	Source Contig
AK355680	CUST_19549_PI427708080	None	None	None
MLOC_1432.1	None	Available	None	contig_1124581 (Mapped)
MLOC_1721.1	None	Available	None	contig_115379 (Mapped)
MLOC_19654.2	None	Available	Available	contig_158583 (Mapped)
MLOC_26414.1	None	Available	None	contig_1754257 (Not mapped)
MLOC_28399.1	None	Available	None	contig_1914539 (Mapped)
MLOC_28766.3	None	Available	None	contig_194588 (Mapped)
MLOC_30083.1	None	Available	None	contig_206337 (Not mapped)
MLOC_30447.1	None	Available	None	contig_2097934 (Not mapped)
MLOC_32423.1	None	Available	None	contig_2285024 (Not mapped)
MLOC_32474.1	None	Available	None	contig_2288934 (Not mapped)
MLOC_34292.1	None	Available	None	contig_2433807 (Not mapped)
MLOC_40540.1	None	Available	None	contig_2560861 (Mapped)
MLOC_41509.1	None	Available	None	contig_259207 (Mapped)
MLOC_43661.1	None	Available	None	contig_271927 (Mapped)
MLOC_45977.1	None	Available	None	contig_283829 (Not mapped)
MLOC_47343.1	None	Available	None	contig_304483 (Mapped)
MLOC_48137.1	None	Available	None	contig_318199 (Not mapped)

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP6	None	-	-	-	-	-
TAIR PP10	None	-	-	-	-	-